Dr. Muth has been developing this course since the
Spring
of 2003 using
cystathionine-beta
lyase as the enzyme of interest. He feels that the laboratory
curriculum could be adapted to study almost any enzyme that has been
cloned into an expression vector.
A recent update was presented at the
"Interdisciplinary Science Education: Institutional Examples, Lessons
Learned and Challenges" conference at the Midstates Consortium for
Mathematics and Science sponsored by the Pew Charitable Trust.
A Research-Style Biochemistry Lab: Collaborating on
the Integration of Research and Teaching at Two Institutions
Week 1
Design:
Introduction, Overview and Chemical Mechanism of CBL (overview)
Week 2
Design:
Molecular Modeling and Mutant Design (Pre-lab 1
due, overview)
Week
3
DNA: PCR, ligation and
transformation (Pre-lab 2 due)
Week
4
DNA: Plasmid isolation analysis (Pre-lab
3 due, Analysis assignment 1 due)
Week
5
DNA: Sequencing (Pre-lab 4 due, Analysis assignment 2 due)
Week
6
Protein: Isolation and purification (Pre-lab
5 due)
Week
7*
Protein:
Concentration determination (Pre-lab 6 due, Analysis assignment 3 due)
Week 8 No Lab
Week 9*
Protein:
Molecular weight and structure analysis (Pre-lab
7 due, Analysis assignment 4 due)
Week 10
Protein:
CBL kinetic assay optimization (Pre-lab 8 due,
Analysis assignment 5 due, overview)
Week 11 CBL kinetics (Pre-lab 9 due)
Week
12
CBL kinetics (Analysis assignment 6 due)
Week
13
CBL kinetics
Week 14
Presentations
*could be combined and completed in a single
week
For experimental details, tips, hints and background please consult the following links:
Appendix I.
Pipettors
and pipetting
Appendix II.
Concentration
and dilution
Appendix III.
Spectroscopy
Appendix IV. Gel
electrophoresis
Appendix V.
Creating
images on the Lumi-Imager F1 device
Appendix VI.
Creating
figures
The Protein Data
Bank
Biopolymer
Calculator
NEB
WebCutter
NCBI Blast
Search
DNA
Sequencing
DNA
Synthesis